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-rw-r--r--Bootloaders/CDC/BootloaderCDC.txt16
-rw-r--r--Bootloaders/CDC/doxyfile108
-rw-r--r--Bootloaders/DFU/BootloaderDFU.txt16
-rw-r--r--Bootloaders/DFU/doxyfile108
-rw-r--r--Bootloaders/HID/BootloaderHID.txt6
-rw-r--r--Bootloaders/HID/doxyfile108
-rw-r--r--Bootloaders/MassStorage/BootloaderMassStorage.txt16
-rw-r--r--Bootloaders/MassStorage/doxyfile108
-rw-r--r--Bootloaders/Printer/BootloaderPrinter.txt6
-rw-r--r--Bootloaders/Printer/doxyfile108
10 files changed, 400 insertions, 200 deletions
diff --git a/Bootloaders/CDC/BootloaderCDC.txt b/Bootloaders/CDC/BootloaderCDC.txt
index 1e054de45..55e5e55a4 100644
--- a/Bootloaders/CDC/BootloaderCDC.txt
+++ b/Bootloaders/CDC/BootloaderCDC.txt
@@ -57,6 +57,22 @@
* \warning <b>THIS BOOTLOADER IS NOT SECURE.</b> Malicious entities can recover written data, even if the device
* lockbits are set.
*
+ * \section Sec_Running Running the Bootloader
+ *
+ * This bootloader is designed to be started via the HWB mechanism of the USB AVRs; ground the HWB pin (see device
+ * datasheet) then momentarily ground /RESET to start the bootloader. This assumes the HWBE fuse is set and the BOOTRST
+ * fuse is cleared.
+ *
+ * For board specific exceptions to the above, see below.
+ *
+ * \subsection SSec_XPLAIN Atmel Xplain Board
+ * Ground the USB AVR JTAG's \c TCK pin to ground when powering on the board to start the bootloader. This assumes the
+ * \c HWBE fuse is cleared and the \c BOOTRST fuse is set as the HWBE pin is not user accessible on this board.
+ *
+ * \subsection SSec_Leonardo Arduino Leonardo Board
+ * Ground \c IO13 when powering the board to start the bootloader. This assumes the \c HWBE fuse is cleared and the
+ * \c BOOTRST fuse is set as the HWBE pin is not user accessible on this board.
+ *
* \section Sec_Installation Driver Installation
*
* After running this bootloader for the first time on a new computer, you will need to supply the .INF
diff --git a/Bootloaders/CDC/doxyfile b/Bootloaders/CDC/doxyfile
index 5419c450d..2dfb2a08a 100644
--- a/Bootloaders/CDC/doxyfile
+++ b/Bootloaders/CDC/doxyfile
@@ -1,4 +1,4 @@
-# Doxyfile 1.8.6
+# Doxyfile 1.8.8
# This file describes the settings to be used by the documentation system
# doxygen (www.doxygen.org) for a project.
@@ -70,6 +70,14 @@ OUTPUT_DIRECTORY = ./Documentation/
CREATE_SUBDIRS = NO
+# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
+# characters to appear in the names of generated files. If set to NO, non-ASCII
+# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
+# U+3044.
+# The default value is: NO.
+
+ALLOW_UNICODE_NAMES = NO
+
# The OUTPUT_LANGUAGE tag is used to specify the language in which all
# documentation generated by doxygen is written. Doxygen will use this
# information to generate all constant output in the proper language.
@@ -271,9 +279,12 @@ OPTIMIZE_OUTPUT_VHDL = NO
# extension. Doxygen has a built-in mapping, but you can override or extend it
# using this tag. The format is ext=language, where ext is a file extension, and
# language is one of the parsers supported by doxygen: IDL, Java, Javascript,
-# C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL. For instance to make
-# doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
-# (default is Fortran), use: inc=Fortran f=C.
+# C#, C, C++, D, PHP, Objective-C, Python, Fortran (fixed format Fortran:
+# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
+# Fortran. In the later case the parser tries to guess whether the code is fixed
+# or free formatted code, this is the default for Fortran type files), VHDL. For
+# instance to make doxygen treat .inc files as Fortran files (default is PHP),
+# and .f files as C (default is Fortran), use: inc=Fortran f=C.
#
# Note For files without extension you can use no_extension as a placeholder.
#
@@ -679,8 +690,7 @@ LAYOUT_FILE =
# to be installed. See also http://en.wikipedia.org/wiki/BibTeX for more info.
# For LaTeX the style of the bibliography can be controlled using
# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
-# search path. Do not use file names with spaces, bibtex cannot handle them. See
-# also \cite for info how to create references.
+# search path. See also \cite for info how to create references.
CITE_BIB_FILES =
@@ -981,7 +991,7 @@ USE_HTAGS = NO
VERBATIM_HEADERS = NO
# If the CLANG_ASSISTED_PARSING tag is set to YES, then doxygen will use the
-# clang parser (see: http://clang.llvm.org/) for more acurate parsing at the
+# clang parser (see: http://clang.llvm.org/) for more accurate parsing at the
# cost of reduced performance. This can be particularly helpful with template
# rich C++ code for which doxygen's built-in parser lacks the necessary type
# information.
@@ -1091,13 +1101,15 @@ HTML_FOOTER =
HTML_STYLESHEET =
-# The HTML_EXTRA_STYLESHEET tag can be used to specify an additional user-
-# defined cascading style sheet that is included after the standard style sheets
+# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
+# cascading style sheets that are included after the standard style sheets
# created by doxygen. Using this option one can overrule certain style aspects.
# This is preferred over using HTML_STYLESHEET since it does not replace the
# standard style sheet and is therefor more robust against future updates.
-# Doxygen will copy the style sheet file to the output directory. For an example
-# see the documentation.
+# Doxygen will copy the style sheet files to the output directory.
+# Note: The order of the extra stylesheet files is of importance (e.g. the last
+# stylesheet in the list overrules the setting of the previous ones in the
+# list). For an example see the documentation.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_EXTRA_STYLESHEET =
@@ -1262,7 +1274,8 @@ GENERATE_CHI = NO
CHM_INDEX_ENCODING =
# The BINARY_TOC flag controls whether a binary table of contents is generated (
-# YES) or a normal table of contents ( NO) in the .chm file.
+# YES) or a normal table of contents ( NO) in the .chm file. Furthermore it
+# enables the Previous and Next buttons.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
@@ -1502,11 +1515,11 @@ SEARCHENGINE = NO
# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
# implemented using a web server instead of a web client using Javascript. There
-# are two flavours of web server based searching depending on the
-# EXTERNAL_SEARCH setting. When disabled, doxygen will generate a PHP script for
-# searching and an index file used by the script. When EXTERNAL_SEARCH is
-# enabled the indexing and searching needs to be provided by external tools. See
-# the section "External Indexing and Searching" for details.
+# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
+# setting. When disabled, doxygen will generate a PHP script for searching and
+# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
+# and searching needs to be provided by external tools. See the section
+# "External Indexing and Searching" for details.
# The default value is: NO.
# This tag requires that the tag SEARCHENGINE is set to YES.
@@ -1634,17 +1647,19 @@ EXTRA_PACKAGES =
#
# Note: Only use a user-defined header if you know what you are doing! The
# following commands have a special meaning inside the header: $title,
-# $datetime, $date, $doxygenversion, $projectname, $projectnumber. Doxygen will
-# replace them by respectively the title of the page, the current date and time,
-# only the current date, the version number of doxygen, the project name (see
-# PROJECT_NAME), or the project number (see PROJECT_NUMBER).
+# $datetime, $date, $doxygenversion, $projectname, $projectnumber,
+# $projectbrief, $projectlogo. Doxygen will replace $title with the empy string,
+# for the replacement values of the other commands the user is refered to
+# HTML_HEADER.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_HEADER =
# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for the
# generated LaTeX document. The footer should contain everything after the last
-# chapter. If it is left blank doxygen will generate a standard footer.
+# chapter. If it is left blank doxygen will generate a standard footer. See
+# LATEX_HEADER for more information on how to generate a default footer and what
+# special commands can be used inside the footer.
#
# Note: Only use a user-defined footer if you know what you are doing!
# This tag requires that the tag GENERATE_LATEX is set to YES.
@@ -1668,7 +1683,7 @@ LATEX_EXTRA_FILES =
PDF_HYPERLINKS = YES
-# If the LATEX_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
+# If the USE_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
# the PDF file directly from the LaTeX files. Set this option to YES to get a
# higher quality PDF documentation.
# The default value is: YES.
@@ -1794,6 +1809,13 @@ MAN_OUTPUT = man
MAN_EXTENSION = .3
+# The MAN_SUBDIR tag determines the name of the directory created within
+# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
+# MAN_EXTENSION with the initial . removed.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_SUBDIR =
+
# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
# will generate one additional man file for each entity documented in the real
# man page(s). These additional files only source the real man page, but without
@@ -1821,18 +1843,6 @@ GENERATE_XML = NO
XML_OUTPUT = xml
-# The XML_SCHEMA tag can be used to specify a XML schema, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_SCHEMA =
-
-# The XML_DTD tag can be used to specify a XML DTD, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_DTD =
-
# If the XML_PROGRAMLISTING tag is set to YES doxygen will dump the program
# listings (including syntax highlighting and cross-referencing information) to
# the XML output. Note that enabling this will significantly increase the size
@@ -1860,6 +1870,15 @@ GENERATE_DOCBOOK = NO
DOCBOOK_OUTPUT = docbook
+# If the DOCBOOK_PROGRAMLISTING tag is set to YES doxygen will include the
+# program listings (including syntax highlighting and cross-referencing
+# information) to the DOCBOOK output. Note that enabling this will significantly
+# increase the size of the DOCBOOK output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
+
+DOCBOOK_PROGRAMLISTING = NO
+
#---------------------------------------------------------------------------
# Configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
@@ -1981,9 +2000,9 @@ PREDEFINED = __DOXYGEN__ \
EXPAND_AS_DEFINED =
# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
-# remove all refrences to function-like macros that are alone on a line, have an
-# all uppercase name, and do not end with a semicolon. Such function macros are
-# typically used for boiler-plate code, and will confuse the parser if not
+# remove all references to function-like macros that are alone on a line, have
+# an all uppercase name, and do not end with a semicolon. Such function macros
+# are typically used for boiler-plate code, and will confuse the parser if not
# removed.
# The default value is: YES.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
@@ -2003,7 +2022,7 @@ SKIP_FUNCTION_MACROS = YES
# where loc1 and loc2 can be relative or absolute paths or URLs. See the
# section "Linking to external documentation" for more information about the use
# of tag files.
-# Note: Each tag file must have an unique name (where the name does NOT include
+# Note: Each tag file must have a unique name (where the name does NOT include
# the path). If a tag file is not located in the directory in which doxygen is
# run, you must also specify the path to the tagfile here.
@@ -2095,7 +2114,7 @@ HAVE_DOT = NO
DOT_NUM_THREADS = 0
-# When you want a differently looking font n the dot files that doxygen
+# When you want a differently looking font in the dot files that doxygen
# generates you can specify the font name using DOT_FONTNAME. You need to make
# sure dot is able to find the font, which can be done by putting it in a
# standard location or by setting the DOTFONTPATH environment variable or by
@@ -2276,6 +2295,15 @@ MSCFILE_DIRS =
DIAFILE_DIRS =
+# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
+# path where java can find the plantuml.jar file. If left blank, it is assumed
+# PlantUML is not used or called during a preprocessing step. Doxygen will
+# generate a warning when it encounters a \startuml command in this case and
+# will not generate output for the diagram.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+PLANTUML_JAR_PATH =
+
# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
# that will be shown in the graph. If the number of nodes in a graph becomes
# larger than this value, doxygen will truncate the graph, which is visualized
diff --git a/Bootloaders/DFU/BootloaderDFU.txt b/Bootloaders/DFU/BootloaderDFU.txt
index b6ba45553..e63bcc1f0 100644
--- a/Bootloaders/DFU/BootloaderDFU.txt
+++ b/Bootloaders/DFU/BootloaderDFU.txt
@@ -55,6 +55,22 @@
* When the bootloader is running, the board's LED(s) will flash at regular intervals to distinguish the
* bootloader from the normal user application.
*
+ * \section Sec_Running Running the Bootloader
+ *
+ * This bootloader is designed to be started via the HWB mechanism of the USB AVRs; ground the HWB pin (see device
+ * datasheet) then momentarily ground /RESET to start the bootloader. This assumes the HWBE fuse is set and the BOOTRST
+ * fuse is cleared.
+ *
+ * For board specific exceptions to the above, see below.
+ *
+ * \subsection SSec_XPLAIN Atmel Xplain Board
+ * Ground the USB AVR JTAG's \c TCK pin to ground when powering on the board to start the bootloader. This assumes the
+ * \c HWBE fuse is cleared and the \c BOOTRST fuse is set as the HWBE pin is not user accessible on this board.
+ *
+ * \subsection SSec_Leonardo Arduino Leonardo Board
+ * Ground \c IO13 when powering the board to start the bootloader. This assumes the \c HWBE fuse is cleared and the
+ * \c BOOTRST fuse is set as the HWBE pin is not user accessible on this board.
+ *
* \section Sec_Installation Driver Installation
*
* This bootloader is designed to be compatible with Atmel's provided Windows DFU class drivers. You will need to
diff --git a/Bootloaders/DFU/doxyfile b/Bootloaders/DFU/doxyfile
index 231c333ec..6cc42af79 100644
--- a/Bootloaders/DFU/doxyfile
+++ b/Bootloaders/DFU/doxyfile
@@ -1,4 +1,4 @@
-# Doxyfile 1.8.6
+# Doxyfile 1.8.8
# This file describes the settings to be used by the documentation system
# doxygen (www.doxygen.org) for a project.
@@ -70,6 +70,14 @@ OUTPUT_DIRECTORY = ./Documentation/
CREATE_SUBDIRS = NO
+# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
+# characters to appear in the names of generated files. If set to NO, non-ASCII
+# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
+# U+3044.
+# The default value is: NO.
+
+ALLOW_UNICODE_NAMES = NO
+
# The OUTPUT_LANGUAGE tag is used to specify the language in which all
# documentation generated by doxygen is written. Doxygen will use this
# information to generate all constant output in the proper language.
@@ -271,9 +279,12 @@ OPTIMIZE_OUTPUT_VHDL = NO
# extension. Doxygen has a built-in mapping, but you can override or extend it
# using this tag. The format is ext=language, where ext is a file extension, and
# language is one of the parsers supported by doxygen: IDL, Java, Javascript,
-# C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL. For instance to make
-# doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
-# (default is Fortran), use: inc=Fortran f=C.
+# C#, C, C++, D, PHP, Objective-C, Python, Fortran (fixed format Fortran:
+# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
+# Fortran. In the later case the parser tries to guess whether the code is fixed
+# or free formatted code, this is the default for Fortran type files), VHDL. For
+# instance to make doxygen treat .inc files as Fortran files (default is PHP),
+# and .f files as C (default is Fortran), use: inc=Fortran f=C.
#
# Note For files without extension you can use no_extension as a placeholder.
#
@@ -679,8 +690,7 @@ LAYOUT_FILE =
# to be installed. See also http://en.wikipedia.org/wiki/BibTeX for more info.
# For LaTeX the style of the bibliography can be controlled using
# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
-# search path. Do not use file names with spaces, bibtex cannot handle them. See
-# also \cite for info how to create references.
+# search path. See also \cite for info how to create references.
CITE_BIB_FILES =
@@ -981,7 +991,7 @@ USE_HTAGS = NO
VERBATIM_HEADERS = NO
# If the CLANG_ASSISTED_PARSING tag is set to YES, then doxygen will use the
-# clang parser (see: http://clang.llvm.org/) for more acurate parsing at the
+# clang parser (see: http://clang.llvm.org/) for more accurate parsing at the
# cost of reduced performance. This can be particularly helpful with template
# rich C++ code for which doxygen's built-in parser lacks the necessary type
# information.
@@ -1091,13 +1101,15 @@ HTML_FOOTER =
HTML_STYLESHEET =
-# The HTML_EXTRA_STYLESHEET tag can be used to specify an additional user-
-# defined cascading style sheet that is included after the standard style sheets
+# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
+# cascading style sheets that are included after the standard style sheets
# created by doxygen. Using this option one can overrule certain style aspects.
# This is preferred over using HTML_STYLESHEET since it does not replace the
# standard style sheet and is therefor more robust against future updates.
-# Doxygen will copy the style sheet file to the output directory. For an example
-# see the documentation.
+# Doxygen will copy the style sheet files to the output directory.
+# Note: The order of the extra stylesheet files is of importance (e.g. the last
+# stylesheet in the list overrules the setting of the previous ones in the
+# list). For an example see the documentation.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_EXTRA_STYLESHEET =
@@ -1262,7 +1274,8 @@ GENERATE_CHI = NO
CHM_INDEX_ENCODING =
# The BINARY_TOC flag controls whether a binary table of contents is generated (
-# YES) or a normal table of contents ( NO) in the .chm file.
+# YES) or a normal table of contents ( NO) in the .chm file. Furthermore it
+# enables the Previous and Next buttons.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
@@ -1502,11 +1515,11 @@ SEARCHENGINE = NO
# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
# implemented using a web server instead of a web client using Javascript. There
-# are two flavours of web server based searching depending on the
-# EXTERNAL_SEARCH setting. When disabled, doxygen will generate a PHP script for
-# searching and an index file used by the script. When EXTERNAL_SEARCH is
-# enabled the indexing and searching needs to be provided by external tools. See
-# the section "External Indexing and Searching" for details.
+# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
+# setting. When disabled, doxygen will generate a PHP script for searching and
+# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
+# and searching needs to be provided by external tools. See the section
+# "External Indexing and Searching" for details.
# The default value is: NO.
# This tag requires that the tag SEARCHENGINE is set to YES.
@@ -1634,17 +1647,19 @@ EXTRA_PACKAGES =
#
# Note: Only use a user-defined header if you know what you are doing! The
# following commands have a special meaning inside the header: $title,
-# $datetime, $date, $doxygenversion, $projectname, $projectnumber. Doxygen will
-# replace them by respectively the title of the page, the current date and time,
-# only the current date, the version number of doxygen, the project name (see
-# PROJECT_NAME), or the project number (see PROJECT_NUMBER).
+# $datetime, $date, $doxygenversion, $projectname, $projectnumber,
+# $projectbrief, $projectlogo. Doxygen will replace $title with the empy string,
+# for the replacement values of the other commands the user is refered to
+# HTML_HEADER.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_HEADER =
# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for the
# generated LaTeX document. The footer should contain everything after the last
-# chapter. If it is left blank doxygen will generate a standard footer.
+# chapter. If it is left blank doxygen will generate a standard footer. See
+# LATEX_HEADER for more information on how to generate a default footer and what
+# special commands can be used inside the footer.
#
# Note: Only use a user-defined footer if you know what you are doing!
# This tag requires that the tag GENERATE_LATEX is set to YES.
@@ -1668,7 +1683,7 @@ LATEX_EXTRA_FILES =
PDF_HYPERLINKS = YES
-# If the LATEX_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
+# If the USE_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
# the PDF file directly from the LaTeX files. Set this option to YES to get a
# higher quality PDF documentation.
# The default value is: YES.
@@ -1794,6 +1809,13 @@ MAN_OUTPUT = man
MAN_EXTENSION = .3
+# The MAN_SUBDIR tag determines the name of the directory created within
+# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
+# MAN_EXTENSION with the initial . removed.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_SUBDIR =
+
# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
# will generate one additional man file for each entity documented in the real
# man page(s). These additional files only source the real man page, but without
@@ -1821,18 +1843,6 @@ GENERATE_XML = NO
XML_OUTPUT = xml
-# The XML_SCHEMA tag can be used to specify a XML schema, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_SCHEMA =
-
-# The XML_DTD tag can be used to specify a XML DTD, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_DTD =
-
# If the XML_PROGRAMLISTING tag is set to YES doxygen will dump the program
# listings (including syntax highlighting and cross-referencing information) to
# the XML output. Note that enabling this will significantly increase the size
@@ -1860,6 +1870,15 @@ GENERATE_DOCBOOK = NO
DOCBOOK_OUTPUT = docbook
+# If the DOCBOOK_PROGRAMLISTING tag is set to YES doxygen will include the
+# program listings (including syntax highlighting and cross-referencing
+# information) to the DOCBOOK output. Note that enabling this will significantly
+# increase the size of the DOCBOOK output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
+
+DOCBOOK_PROGRAMLISTING = NO
+
#---------------------------------------------------------------------------
# Configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
@@ -1981,9 +2000,9 @@ PREDEFINED = __DOXYGEN__ \
EXPAND_AS_DEFINED =
# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
-# remove all refrences to function-like macros that are alone on a line, have an
-# all uppercase name, and do not end with a semicolon. Such function macros are
-# typically used for boiler-plate code, and will confuse the parser if not
+# remove all references to function-like macros that are alone on a line, have
+# an all uppercase name, and do not end with a semicolon. Such function macros
+# are typically used for boiler-plate code, and will confuse the parser if not
# removed.
# The default value is: YES.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
@@ -2003,7 +2022,7 @@ SKIP_FUNCTION_MACROS = YES
# where loc1 and loc2 can be relative or absolute paths or URLs. See the
# section "Linking to external documentation" for more information about the use
# of tag files.
-# Note: Each tag file must have an unique name (where the name does NOT include
+# Note: Each tag file must have a unique name (where the name does NOT include
# the path). If a tag file is not located in the directory in which doxygen is
# run, you must also specify the path to the tagfile here.
@@ -2095,7 +2114,7 @@ HAVE_DOT = NO
DOT_NUM_THREADS = 0
-# When you want a differently looking font n the dot files that doxygen
+# When you want a differently looking font in the dot files that doxygen
# generates you can specify the font name using DOT_FONTNAME. You need to make
# sure dot is able to find the font, which can be done by putting it in a
# standard location or by setting the DOTFONTPATH environment variable or by
@@ -2276,6 +2295,15 @@ MSCFILE_DIRS =
DIAFILE_DIRS =
+# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
+# path where java can find the plantuml.jar file. If left blank, it is assumed
+# PlantUML is not used or called during a preprocessing step. Doxygen will
+# generate a warning when it encounters a \startuml command in this case and
+# will not generate output for the diagram.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+PLANTUML_JAR_PATH =
+
# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
# that will be shown in the graph. If the number of nodes in a graph becomes
# larger than this value, doxygen will truncate the graph, which is visualized
diff --git a/Bootloaders/HID/BootloaderHID.txt b/Bootloaders/HID/BootloaderHID.txt
index 8f26f34d5..63c1505cc 100644
--- a/Bootloaders/HID/BootloaderHID.txt
+++ b/Bootloaders/HID/BootloaderHID.txt
@@ -59,6 +59,12 @@
* \warning <b>THIS BOOTLOADER IS NOT SECURE.</b> Malicious entities can recover written data, even if the device
* lockbits are set.
*
+ * \section Sec_Running Running the Bootloader
+ *
+ * This bootloader is designed to be started via the HWB mechanism of the USB AVRs; ground the HWB pin (see device
+ * datasheet) then momentarily ground /RESET to start the bootloader. This assumes the HWBE fuse is set and the BOOTRST
+ * fuse is cleared.
+ *
* \section Sec_Installation Driver Installation
*
* This bootloader uses the HID class driver inbuilt into all modern operating systems, thus no additional drivers
diff --git a/Bootloaders/HID/doxyfile b/Bootloaders/HID/doxyfile
index de13c09a5..281792ac9 100644
--- a/Bootloaders/HID/doxyfile
+++ b/Bootloaders/HID/doxyfile
@@ -1,4 +1,4 @@
-# Doxyfile 1.8.6
+# Doxyfile 1.8.8
# This file describes the settings to be used by the documentation system
# doxygen (www.doxygen.org) for a project.
@@ -70,6 +70,14 @@ OUTPUT_DIRECTORY = ./Documentation/
CREATE_SUBDIRS = NO
+# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
+# characters to appear in the names of generated files. If set to NO, non-ASCII
+# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
+# U+3044.
+# The default value is: NO.
+
+ALLOW_UNICODE_NAMES = NO
+
# The OUTPUT_LANGUAGE tag is used to specify the language in which all
# documentation generated by doxygen is written. Doxygen will use this
# information to generate all constant output in the proper language.
@@ -271,9 +279,12 @@ OPTIMIZE_OUTPUT_VHDL = NO
# extension. Doxygen has a built-in mapping, but you can override or extend it
# using this tag. The format is ext=language, where ext is a file extension, and
# language is one of the parsers supported by doxygen: IDL, Java, Javascript,
-# C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL. For instance to make
-# doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
-# (default is Fortran), use: inc=Fortran f=C.
+# C#, C, C++, D, PHP, Objective-C, Python, Fortran (fixed format Fortran:
+# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
+# Fortran. In the later case the parser tries to guess whether the code is fixed
+# or free formatted code, this is the default for Fortran type files), VHDL. For
+# instance to make doxygen treat .inc files as Fortran files (default is PHP),
+# and .f files as C (default is Fortran), use: inc=Fortran f=C.
#
# Note For files without extension you can use no_extension as a placeholder.
#
@@ -679,8 +690,7 @@ LAYOUT_FILE =
# to be installed. See also http://en.wikipedia.org/wiki/BibTeX for more info.
# For LaTeX the style of the bibliography can be controlled using
# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
-# search path. Do not use file names with spaces, bibtex cannot handle them. See
-# also \cite for info how to create references.
+# search path. See also \cite for info how to create references.
CITE_BIB_FILES =
@@ -983,7 +993,7 @@ USE_HTAGS = NO
VERBATIM_HEADERS = NO
# If the CLANG_ASSISTED_PARSING tag is set to YES, then doxygen will use the
-# clang parser (see: http://clang.llvm.org/) for more acurate parsing at the
+# clang parser (see: http://clang.llvm.org/) for more accurate parsing at the
# cost of reduced performance. This can be particularly helpful with template
# rich C++ code for which doxygen's built-in parser lacks the necessary type
# information.
@@ -1093,13 +1103,15 @@ HTML_FOOTER =
HTML_STYLESHEET =
-# The HTML_EXTRA_STYLESHEET tag can be used to specify an additional user-
-# defined cascading style sheet that is included after the standard style sheets
+# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
+# cascading style sheets that are included after the standard style sheets
# created by doxygen. Using this option one can overrule certain style aspects.
# This is preferred over using HTML_STYLESHEET since it does not replace the
# standard style sheet and is therefor more robust against future updates.
-# Doxygen will copy the style sheet file to the output directory. For an example
-# see the documentation.
+# Doxygen will copy the style sheet files to the output directory.
+# Note: The order of the extra stylesheet files is of importance (e.g. the last
+# stylesheet in the list overrules the setting of the previous ones in the
+# list). For an example see the documentation.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_EXTRA_STYLESHEET =
@@ -1264,7 +1276,8 @@ GENERATE_CHI = NO
CHM_INDEX_ENCODING =
# The BINARY_TOC flag controls whether a binary table of contents is generated (
-# YES) or a normal table of contents ( NO) in the .chm file.
+# YES) or a normal table of contents ( NO) in the .chm file. Furthermore it
+# enables the Previous and Next buttons.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
@@ -1504,11 +1517,11 @@ SEARCHENGINE = NO
# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
# implemented using a web server instead of a web client using Javascript. There
-# are two flavours of web server based searching depending on the
-# EXTERNAL_SEARCH setting. When disabled, doxygen will generate a PHP script for
-# searching and an index file used by the script. When EXTERNAL_SEARCH is
-# enabled the indexing and searching needs to be provided by external tools. See
-# the section "External Indexing and Searching" for details.
+# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
+# setting. When disabled, doxygen will generate a PHP script for searching and
+# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
+# and searching needs to be provided by external tools. See the section
+# "External Indexing and Searching" for details.
# The default value is: NO.
# This tag requires that the tag SEARCHENGINE is set to YES.
@@ -1636,17 +1649,19 @@ EXTRA_PACKAGES =
#
# Note: Only use a user-defined header if you know what you are doing! The
# following commands have a special meaning inside the header: $title,
-# $datetime, $date, $doxygenversion, $projectname, $projectnumber. Doxygen will
-# replace them by respectively the title of the page, the current date and time,
-# only the current date, the version number of doxygen, the project name (see
-# PROJECT_NAME), or the project number (see PROJECT_NUMBER).
+# $datetime, $date, $doxygenversion, $projectname, $projectnumber,
+# $projectbrief, $projectlogo. Doxygen will replace $title with the empy string,
+# for the replacement values of the other commands the user is refered to
+# HTML_HEADER.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_HEADER =
# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for the
# generated LaTeX document. The footer should contain everything after the last
-# chapter. If it is left blank doxygen will generate a standard footer.
+# chapter. If it is left blank doxygen will generate a standard footer. See
+# LATEX_HEADER for more information on how to generate a default footer and what
+# special commands can be used inside the footer.
#
# Note: Only use a user-defined footer if you know what you are doing!
# This tag requires that the tag GENERATE_LATEX is set to YES.
@@ -1670,7 +1685,7 @@ LATEX_EXTRA_FILES =
PDF_HYPERLINKS = YES
-# If the LATEX_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
+# If the USE_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
# the PDF file directly from the LaTeX files. Set this option to YES to get a
# higher quality PDF documentation.
# The default value is: YES.
@@ -1796,6 +1811,13 @@ MAN_OUTPUT = man
MAN_EXTENSION = .3
+# The MAN_SUBDIR tag determines the name of the directory created within
+# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
+# MAN_EXTENSION with the initial . removed.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_SUBDIR =
+
# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
# will generate one additional man file for each entity documented in the real
# man page(s). These additional files only source the real man page, but without
@@ -1823,18 +1845,6 @@ GENERATE_XML = NO
XML_OUTPUT = xml
-# The XML_SCHEMA tag can be used to specify a XML schema, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_SCHEMA =
-
-# The XML_DTD tag can be used to specify a XML DTD, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_DTD =
-
# If the XML_PROGRAMLISTING tag is set to YES doxygen will dump the program
# listings (including syntax highlighting and cross-referencing information) to
# the XML output. Note that enabling this will significantly increase the size
@@ -1862,6 +1872,15 @@ GENERATE_DOCBOOK = NO
DOCBOOK_OUTPUT = docbook
+# If the DOCBOOK_PROGRAMLISTING tag is set to YES doxygen will include the
+# program listings (including syntax highlighting and cross-referencing
+# information) to the DOCBOOK output. Note that enabling this will significantly
+# increase the size of the DOCBOOK output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
+
+DOCBOOK_PROGRAMLISTING = NO
+
#---------------------------------------------------------------------------
# Configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
@@ -1983,9 +2002,9 @@ PREDEFINED = __DOXYGEN__ \
EXPAND_AS_DEFINED =
# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
-# remove all refrences to function-like macros that are alone on a line, have an
-# all uppercase name, and do not end with a semicolon. Such function macros are
-# typically used for boiler-plate code, and will confuse the parser if not
+# remove all references to function-like macros that are alone on a line, have
+# an all uppercase name, and do not end with a semicolon. Such function macros
+# are typically used for boiler-plate code, and will confuse the parser if not
# removed.
# The default value is: YES.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
@@ -2005,7 +2024,7 @@ SKIP_FUNCTION_MACROS = YES
# where loc1 and loc2 can be relative or absolute paths or URLs. See the
# section "Linking to external documentation" for more information about the use
# of tag files.
-# Note: Each tag file must have an unique name (where the name does NOT include
+# Note: Each tag file must have a unique name (where the name does NOT include
# the path). If a tag file is not located in the directory in which doxygen is
# run, you must also specify the path to the tagfile here.
@@ -2097,7 +2116,7 @@ HAVE_DOT = NO
DOT_NUM_THREADS = 0
-# When you want a differently looking font n the dot files that doxygen
+# When you want a differently looking font in the dot files that doxygen
# generates you can specify the font name using DOT_FONTNAME. You need to make
# sure dot is able to find the font, which can be done by putting it in a
# standard location or by setting the DOTFONTPATH environment variable or by
@@ -2278,6 +2297,15 @@ MSCFILE_DIRS =
DIAFILE_DIRS =
+# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
+# path where java can find the plantuml.jar file. If left blank, it is assumed
+# PlantUML is not used or called during a preprocessing step. Doxygen will
+# generate a warning when it encounters a \startuml command in this case and
+# will not generate output for the diagram.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+PLANTUML_JAR_PATH =
+
# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
# that will be shown in the graph. If the number of nodes in a graph becomes
# larger than this value, doxygen will truncate the graph, which is visualized
diff --git a/Bootloaders/MassStorage/BootloaderMassStorage.txt b/Bootloaders/MassStorage/BootloaderMassStorage.txt
index 493f43ca7..e09484793 100644
--- a/Bootloaders/MassStorage/BootloaderMassStorage.txt
+++ b/Bootloaders/MassStorage/BootloaderMassStorage.txt
@@ -60,6 +60,22 @@
* \warning <b>THIS BOOTLOADER IS NOT SECURE.</b> Malicious entities can recover written data, even if the device
* lockbits are set.
*
+ * \section Sec_Running Running the Bootloader
+ *
+ * This bootloader is designed to be started via the HWB mechanism of the USB AVRs; ground the HWB pin (see device
+ * datasheet) then momentarily ground /RESET to start the bootloader. This assumes the HWBE fuse is set and the BOOTRST
+ * fuse is cleared.
+ *
+ * For board specific exceptions to the above, see below.
+ *
+ * \subsection SSec_XPLAIN Atmel Xplain Board
+ * Ground the USB AVR JTAG's \c TCK pin to ground when powering on the board to start the bootloader. This assumes the
+ * \c HWBE fuse is cleared and the \c BOOTRST fuse is set as the HWBE pin is not user accessible on this board.
+ *
+ * \subsection SSec_Leonardo Arduino Leonardo Board
+ * Ground \c IO13 when powering the board to start the bootloader. This assumes the \c HWBE fuse is cleared and the
+ * \c BOOTRST fuse is set as the HWBE pin is not user accessible on this board.
+ *
* \section Sec_Installation Driver Installation
*
* This bootloader uses the Mass Storage drivers inbuilt into all modern operating systems, thus no additional
diff --git a/Bootloaders/MassStorage/doxyfile b/Bootloaders/MassStorage/doxyfile
index 2a27caedc..9e816908e 100644
--- a/Bootloaders/MassStorage/doxyfile
+++ b/Bootloaders/MassStorage/doxyfile
@@ -1,4 +1,4 @@
-# Doxyfile 1.8.6
+# Doxyfile 1.8.8
# This file describes the settings to be used by the documentation system
# doxygen (www.doxygen.org) for a project.
@@ -70,6 +70,14 @@ OUTPUT_DIRECTORY = ./Documentation/
CREATE_SUBDIRS = NO
+# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
+# characters to appear in the names of generated files. If set to NO, non-ASCII
+# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
+# U+3044.
+# The default value is: NO.
+
+ALLOW_UNICODE_NAMES = NO
+
# The OUTPUT_LANGUAGE tag is used to specify the language in which all
# documentation generated by doxygen is written. Doxygen will use this
# information to generate all constant output in the proper language.
@@ -271,9 +279,12 @@ OPTIMIZE_OUTPUT_VHDL = NO
# extension. Doxygen has a built-in mapping, but you can override or extend it
# using this tag. The format is ext=language, where ext is a file extension, and
# language is one of the parsers supported by doxygen: IDL, Java, Javascript,
-# C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL. For instance to make
-# doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
-# (default is Fortran), use: inc=Fortran f=C.
+# C#, C, C++, D, PHP, Objective-C, Python, Fortran (fixed format Fortran:
+# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
+# Fortran. In the later case the parser tries to guess whether the code is fixed
+# or free formatted code, this is the default for Fortran type files), VHDL. For
+# instance to make doxygen treat .inc files as Fortran files (default is PHP),
+# and .f files as C (default is Fortran), use: inc=Fortran f=C.
#
# Note For files without extension you can use no_extension as a placeholder.
#
@@ -679,8 +690,7 @@ LAYOUT_FILE =
# to be installed. See also http://en.wikipedia.org/wiki/BibTeX for more info.
# For LaTeX the style of the bibliography can be controlled using
# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
-# search path. Do not use file names with spaces, bibtex cannot handle them. See
-# also \cite for info how to create references.
+# search path. See also \cite for info how to create references.
CITE_BIB_FILES =
@@ -981,7 +991,7 @@ USE_HTAGS = NO
VERBATIM_HEADERS = NO
# If the CLANG_ASSISTED_PARSING tag is set to YES, then doxygen will use the
-# clang parser (see: http://clang.llvm.org/) for more acurate parsing at the
+# clang parser (see: http://clang.llvm.org/) for more accurate parsing at the
# cost of reduced performance. This can be particularly helpful with template
# rich C++ code for which doxygen's built-in parser lacks the necessary type
# information.
@@ -1091,13 +1101,15 @@ HTML_FOOTER =
HTML_STYLESHEET =
-# The HTML_EXTRA_STYLESHEET tag can be used to specify an additional user-
-# defined cascading style sheet that is included after the standard style sheets
+# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
+# cascading style sheets that are included after the standard style sheets
# created by doxygen. Using this option one can overrule certain style aspects.
# This is preferred over using HTML_STYLESHEET since it does not replace the
# standard style sheet and is therefor more robust against future updates.
-# Doxygen will copy the style sheet file to the output directory. For an example
-# see the documentation.
+# Doxygen will copy the style sheet files to the output directory.
+# Note: The order of the extra stylesheet files is of importance (e.g. the last
+# stylesheet in the list overrules the setting of the previous ones in the
+# list). For an example see the documentation.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_EXTRA_STYLESHEET =
@@ -1262,7 +1274,8 @@ GENERATE_CHI = NO
CHM_INDEX_ENCODING =
# The BINARY_TOC flag controls whether a binary table of contents is generated (
-# YES) or a normal table of contents ( NO) in the .chm file.
+# YES) or a normal table of contents ( NO) in the .chm file. Furthermore it
+# enables the Previous and Next buttons.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
@@ -1502,11 +1515,11 @@ SEARCHENGINE = NO
# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
# implemented using a web server instead of a web client using Javascript. There
-# are two flavours of web server based searching depending on the
-# EXTERNAL_SEARCH setting. When disabled, doxygen will generate a PHP script for
-# searching and an index file used by the script. When EXTERNAL_SEARCH is
-# enabled the indexing and searching needs to be provided by external tools. See
-# the section "External Indexing and Searching" for details.
+# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
+# setting. When disabled, doxygen will generate a PHP script for searching and
+# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
+# and searching needs to be provided by external tools. See the section
+# "External Indexing and Searching" for details.
# The default value is: NO.
# This tag requires that the tag SEARCHENGINE is set to YES.
@@ -1634,17 +1647,19 @@ EXTRA_PACKAGES =
#
# Note: Only use a user-defined header if you know what you are doing! The
# following commands have a special meaning inside the header: $title,
-# $datetime, $date, $doxygenversion, $projectname, $projectnumber. Doxygen will
-# replace them by respectively the title of the page, the current date and time,
-# only the current date, the version number of doxygen, the project name (see
-# PROJECT_NAME), or the project number (see PROJECT_NUMBER).
+# $datetime, $date, $doxygenversion, $projectname, $projectnumber,
+# $projectbrief, $projectlogo. Doxygen will replace $title with the empy string,
+# for the replacement values of the other commands the user is refered to
+# HTML_HEADER.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_HEADER =
# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for the
# generated LaTeX document. The footer should contain everything after the last
-# chapter. If it is left blank doxygen will generate a standard footer.
+# chapter. If it is left blank doxygen will generate a standard footer. See
+# LATEX_HEADER for more information on how to generate a default footer and what
+# special commands can be used inside the footer.
#
# Note: Only use a user-defined footer if you know what you are doing!
# This tag requires that the tag GENERATE_LATEX is set to YES.
@@ -1668,7 +1683,7 @@ LATEX_EXTRA_FILES =
PDF_HYPERLINKS = YES
-# If the LATEX_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
+# If the USE_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
# the PDF file directly from the LaTeX files. Set this option to YES to get a
# higher quality PDF documentation.
# The default value is: YES.
@@ -1794,6 +1809,13 @@ MAN_OUTPUT = man
MAN_EXTENSION = .3
+# The MAN_SUBDIR tag determines the name of the directory created within
+# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
+# MAN_EXTENSION with the initial . removed.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_SUBDIR =
+
# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
# will generate one additional man file for each entity documented in the real
# man page(s). These additional files only source the real man page, but without
@@ -1821,18 +1843,6 @@ GENERATE_XML = NO
XML_OUTPUT = xml
-# The XML_SCHEMA tag can be used to specify a XML schema, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_SCHEMA =
-
-# The XML_DTD tag can be used to specify a XML DTD, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_DTD =
-
# If the XML_PROGRAMLISTING tag is set to YES doxygen will dump the program
# listings (including syntax highlighting and cross-referencing information) to
# the XML output. Note that enabling this will significantly increase the size
@@ -1860,6 +1870,15 @@ GENERATE_DOCBOOK = NO
DOCBOOK_OUTPUT = docbook
+# If the DOCBOOK_PROGRAMLISTING tag is set to YES doxygen will include the
+# program listings (including syntax highlighting and cross-referencing
+# information) to the DOCBOOK output. Note that enabling this will significantly
+# increase the size of the DOCBOOK output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
+
+DOCBOOK_PROGRAMLISTING = NO
+
#---------------------------------------------------------------------------
# Configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
@@ -1981,9 +2000,9 @@ PREDEFINED = __DOXYGEN__ \
EXPAND_AS_DEFINED =
# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
-# remove all refrences to function-like macros that are alone on a line, have an
-# all uppercase name, and do not end with a semicolon. Such function macros are
-# typically used for boiler-plate code, and will confuse the parser if not
+# remove all references to function-like macros that are alone on a line, have
+# an all uppercase name, and do not end with a semicolon. Such function macros
+# are typically used for boiler-plate code, and will confuse the parser if not
# removed.
# The default value is: YES.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
@@ -2003,7 +2022,7 @@ SKIP_FUNCTION_MACROS = YES
# where loc1 and loc2 can be relative or absolute paths or URLs. See the
# section "Linking to external documentation" for more information about the use
# of tag files.
-# Note: Each tag file must have an unique name (where the name does NOT include
+# Note: Each tag file must have a unique name (where the name does NOT include
# the path). If a tag file is not located in the directory in which doxygen is
# run, you must also specify the path to the tagfile here.
@@ -2095,7 +2114,7 @@ HAVE_DOT = NO
DOT_NUM_THREADS = 0
-# When you want a differently looking font n the dot files that doxygen
+# When you want a differently looking font in the dot files that doxygen
# generates you can specify the font name using DOT_FONTNAME. You need to make
# sure dot is able to find the font, which can be done by putting it in a
# standard location or by setting the DOTFONTPATH environment variable or by
@@ -2276,6 +2295,15 @@ MSCFILE_DIRS =
DIAFILE_DIRS =
+# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
+# path where java can find the plantuml.jar file. If left blank, it is assumed
+# PlantUML is not used or called during a preprocessing step. Doxygen will
+# generate a warning when it encounters a \startuml command in this case and
+# will not generate output for the diagram.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+PLANTUML_JAR_PATH =
+
# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
# that will be shown in the graph. If the number of nodes in a graph becomes
# larger than this value, doxygen will truncate the graph, which is visualized
diff --git a/Bootloaders/Printer/BootloaderPrinter.txt b/Bootloaders/Printer/BootloaderPrinter.txt
index 71e9b2871..cfa51d4cf 100644
--- a/Bootloaders/Printer/BootloaderPrinter.txt
+++ b/Bootloaders/Printer/BootloaderPrinter.txt
@@ -54,6 +54,12 @@
* When the bootloader is running, the board's LED(s) will flash at regular intervals to distinguish the
* bootloader from the normal user application.
*
+ * \section Sec_Running Running the Bootloader
+ *
+ * This bootloader is designed to be started via the HWB mechanism of the USB AVRs; ground the HWB pin (see device
+ * datasheet) then momentarily ground /RESET to start the bootloader. This assumes the HWBE fuse is set and the BOOTRST
+ * fuse is cleared.
+ *
* \section Sec_Installation Driver Installation
*
* This bootloader uses the Generic Text-Only printer drivers inbuilt into all modern operating systems, thus no
diff --git a/Bootloaders/Printer/doxyfile b/Bootloaders/Printer/doxyfile
index e56cbc4f3..a81be54f4 100644
--- a/Bootloaders/Printer/doxyfile
+++ b/Bootloaders/Printer/doxyfile
@@ -1,4 +1,4 @@
-# Doxyfile 1.8.6
+# Doxyfile 1.8.8
# This file describes the settings to be used by the documentation system
# doxygen (www.doxygen.org) for a project.
@@ -70,6 +70,14 @@ OUTPUT_DIRECTORY = ./Documentation/
CREATE_SUBDIRS = NO
+# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
+# characters to appear in the names of generated files. If set to NO, non-ASCII
+# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
+# U+3044.
+# The default value is: NO.
+
+ALLOW_UNICODE_NAMES = NO
+
# The OUTPUT_LANGUAGE tag is used to specify the language in which all
# documentation generated by doxygen is written. Doxygen will use this
# information to generate all constant output in the proper language.
@@ -271,9 +279,12 @@ OPTIMIZE_OUTPUT_VHDL = NO
# extension. Doxygen has a built-in mapping, but you can override or extend it
# using this tag. The format is ext=language, where ext is a file extension, and
# language is one of the parsers supported by doxygen: IDL, Java, Javascript,
-# C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL. For instance to make
-# doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
-# (default is Fortran), use: inc=Fortran f=C.
+# C#, C, C++, D, PHP, Objective-C, Python, Fortran (fixed format Fortran:
+# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
+# Fortran. In the later case the parser tries to guess whether the code is fixed
+# or free formatted code, this is the default for Fortran type files), VHDL. For
+# instance to make doxygen treat .inc files as Fortran files (default is PHP),
+# and .f files as C (default is Fortran), use: inc=Fortran f=C.
#
# Note For files without extension you can use no_extension as a placeholder.
#
@@ -679,8 +690,7 @@ LAYOUT_FILE =
# to be installed. See also http://en.wikipedia.org/wiki/BibTeX for more info.
# For LaTeX the style of the bibliography can be controlled using
# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
-# search path. Do not use file names with spaces, bibtex cannot handle them. See
-# also \cite for info how to create references.
+# search path. See also \cite for info how to create references.
CITE_BIB_FILES =
@@ -981,7 +991,7 @@ USE_HTAGS = NO
VERBATIM_HEADERS = NO
# If the CLANG_ASSISTED_PARSING tag is set to YES, then doxygen will use the
-# clang parser (see: http://clang.llvm.org/) for more acurate parsing at the
+# clang parser (see: http://clang.llvm.org/) for more accurate parsing at the
# cost of reduced performance. This can be particularly helpful with template
# rich C++ code for which doxygen's built-in parser lacks the necessary type
# information.
@@ -1091,13 +1101,15 @@ HTML_FOOTER =
HTML_STYLESHEET =
-# The HTML_EXTRA_STYLESHEET tag can be used to specify an additional user-
-# defined cascading style sheet that is included after the standard style sheets
+# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
+# cascading style sheets that are included after the standard style sheets
# created by doxygen. Using this option one can overrule certain style aspects.
# This is preferred over using HTML_STYLESHEET since it does not replace the
# standard style sheet and is therefor more robust against future updates.
-# Doxygen will copy the style sheet file to the output directory. For an example
-# see the documentation.
+# Doxygen will copy the style sheet files to the output directory.
+# Note: The order of the extra stylesheet files is of importance (e.g. the last
+# stylesheet in the list overrules the setting of the previous ones in the
+# list). For an example see the documentation.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_EXTRA_STYLESHEET =
@@ -1262,7 +1274,8 @@ GENERATE_CHI = NO
CHM_INDEX_ENCODING =
# The BINARY_TOC flag controls whether a binary table of contents is generated (
-# YES) or a normal table of contents ( NO) in the .chm file.
+# YES) or a normal table of contents ( NO) in the .chm file. Furthermore it
+# enables the Previous and Next buttons.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
@@ -1502,11 +1515,11 @@ SEARCHENGINE = NO
# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
# implemented using a web server instead of a web client using Javascript. There
-# are two flavours of web server based searching depending on the
-# EXTERNAL_SEARCH setting. When disabled, doxygen will generate a PHP script for
-# searching and an index file used by the script. When EXTERNAL_SEARCH is
-# enabled the indexing and searching needs to be provided by external tools. See
-# the section "External Indexing and Searching" for details.
+# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
+# setting. When disabled, doxygen will generate a PHP script for searching and
+# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
+# and searching needs to be provided by external tools. See the section
+# "External Indexing and Searching" for details.
# The default value is: NO.
# This tag requires that the tag SEARCHENGINE is set to YES.
@@ -1634,17 +1647,19 @@ EXTRA_PACKAGES =
#
# Note: Only use a user-defined header if you know what you are doing! The
# following commands have a special meaning inside the header: $title,
-# $datetime, $date, $doxygenversion, $projectname, $projectnumber. Doxygen will
-# replace them by respectively the title of the page, the current date and time,
-# only the current date, the version number of doxygen, the project name (see
-# PROJECT_NAME), or the project number (see PROJECT_NUMBER).
+# $datetime, $date, $doxygenversion, $projectname, $projectnumber,
+# $projectbrief, $projectlogo. Doxygen will replace $title with the empy string,
+# for the replacement values of the other commands the user is refered to
+# HTML_HEADER.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_HEADER =
# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for the
# generated LaTeX document. The footer should contain everything after the last
-# chapter. If it is left blank doxygen will generate a standard footer.
+# chapter. If it is left blank doxygen will generate a standard footer. See
+# LATEX_HEADER for more information on how to generate a default footer and what
+# special commands can be used inside the footer.
#
# Note: Only use a user-defined footer if you know what you are doing!
# This tag requires that the tag GENERATE_LATEX is set to YES.
@@ -1668,7 +1683,7 @@ LATEX_EXTRA_FILES =
PDF_HYPERLINKS = YES
-# If the LATEX_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
+# If the USE_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
# the PDF file directly from the LaTeX files. Set this option to YES to get a
# higher quality PDF documentation.
# The default value is: YES.
@@ -1794,6 +1809,13 @@ MAN_OUTPUT = man
MAN_EXTENSION = .3
+# The MAN_SUBDIR tag determines the name of the directory created within
+# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
+# MAN_EXTENSION with the initial . removed.
+# This tag requires that the tag GENERATE_MAN is set to YES.
+
+MAN_SUBDIR =
+
# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
# will generate one additional man file for each entity documented in the real
# man page(s). These additional files only source the real man page, but without
@@ -1821,18 +1843,6 @@ GENERATE_XML = NO
XML_OUTPUT = xml
-# The XML_SCHEMA tag can be used to specify a XML schema, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_SCHEMA =
-
-# The XML_DTD tag can be used to specify a XML DTD, which can be used by a
-# validating XML parser to check the syntax of the XML files.
-# This tag requires that the tag GENERATE_XML is set to YES.
-
-XML_DTD =
-
# If the XML_PROGRAMLISTING tag is set to YES doxygen will dump the program
# listings (including syntax highlighting and cross-referencing information) to
# the XML output. Note that enabling this will significantly increase the size
@@ -1860,6 +1870,15 @@ GENERATE_DOCBOOK = NO
DOCBOOK_OUTPUT = docbook
+# If the DOCBOOK_PROGRAMLISTING tag is set to YES doxygen will include the
+# program listings (including syntax highlighting and cross-referencing
+# information) to the DOCBOOK output. Note that enabling this will significantly
+# increase the size of the DOCBOOK output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
+
+DOCBOOK_PROGRAMLISTING = NO
+
#---------------------------------------------------------------------------
# Configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
@@ -1981,9 +2000,9 @@ PREDEFINED = __DOXYGEN__ \
EXPAND_AS_DEFINED =
# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
-# remove all refrences to function-like macros that are alone on a line, have an
-# all uppercase name, and do not end with a semicolon. Such function macros are
-# typically used for boiler-plate code, and will confuse the parser if not
+# remove all references to function-like macros that are alone on a line, have
+# an all uppercase name, and do not end with a semicolon. Such function macros
+# are typically used for boiler-plate code, and will confuse the parser if not
# removed.
# The default value is: YES.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
@@ -2003,7 +2022,7 @@ SKIP_FUNCTION_MACROS = YES
# where loc1 and loc2 can be relative or absolute paths or URLs. See the
# section "Linking to external documentation" for more information about the use
# of tag files.
-# Note: Each tag file must have an unique name (where the name does NOT include
+# Note: Each tag file must have a unique name (where the name does NOT include
# the path). If a tag file is not located in the directory in which doxygen is
# run, you must also specify the path to the tagfile here.
@@ -2095,7 +2114,7 @@ HAVE_DOT = NO
DOT_NUM_THREADS = 0
-# When you want a differently looking font n the dot files that doxygen
+# When you want a differently looking font in the dot files that doxygen
# generates you can specify the font name using DOT_FONTNAME. You need to make
# sure dot is able to find the font, which can be done by putting it in a
# standard location or by setting the DOTFONTPATH environment variable or by
@@ -2276,6 +2295,15 @@ MSCFILE_DIRS =
DIAFILE_DIRS =
+# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
+# path where java can find the plantuml.jar file. If left blank, it is assumed
+# PlantUML is not used or called during a preprocessing step. Doxygen will
+# generate a warning when it encounters a \startuml command in this case and
+# will not generate output for the diagram.
+# This tag requires that the tag HAVE_DOT is set to YES.
+
+PLANTUML_JAR_PATH =
+
# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
# that will be shown in the graph. If the number of nodes in a graph becomes
# larger than this value, doxygen will truncate the graph, which is visualized