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authorMiodrag Milanovic <mmicko@gmail.com>2021-01-02 10:15:39 +0100
committerMiodrag Milanovic <mmicko@gmail.com>2021-01-02 10:15:39 +0100
commite76cdab6dd77bad411e6ac9372ee527aff89ef17 (patch)
treee9868f05cf455336d75f33b1312d71034f8fb334 /3rdparty/pybind11/docs/advanced/pycpp/numpy.rst
parentc6cdf30501dcb2da01361229dd66a05dad73a132 (diff)
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Update pybind11 to version 2.6.1
Diffstat (limited to '3rdparty/pybind11/docs/advanced/pycpp/numpy.rst')
-rw-r--r--3rdparty/pybind11/docs/advanced/pycpp/numpy.rst84
1 files changed, 67 insertions, 17 deletions
diff --git a/3rdparty/pybind11/docs/advanced/pycpp/numpy.rst b/3rdparty/pybind11/docs/advanced/pycpp/numpy.rst
index 458f99e9..19ed10b3 100644
--- a/3rdparty/pybind11/docs/advanced/pycpp/numpy.rst
+++ b/3rdparty/pybind11/docs/advanced/pycpp/numpy.rst
@@ -57,17 +57,17 @@ specification.
struct buffer_info {
void *ptr;
- ssize_t itemsize;
+ py::ssize_t itemsize;
std::string format;
- ssize_t ndim;
- std::vector<ssize_t> shape;
- std::vector<ssize_t> strides;
+ py::ssize_t ndim;
+ std::vector<py::ssize_t> shape;
+ std::vector<py::ssize_t> strides;
};
To create a C++ function that can take a Python buffer object as an argument,
simply use the type ``py::buffer`` as one of its arguments. Buffers can exist
in a great variety of configurations, hence some safety checks are usually
-necessary in the function body. Below, you can see an basic example on how to
+necessary in the function body. Below, you can see a basic example on how to
define a custom constructor for the Eigen double precision matrix
(``Eigen::MatrixXd``) type, which supports initialization from compatible
buffer objects (e.g. a NumPy matrix).
@@ -81,7 +81,7 @@ buffer objects (e.g. a NumPy matrix).
constexpr bool rowMajor = Matrix::Flags & Eigen::RowMajorBit;
py::class_<Matrix>(m, "Matrix", py::buffer_protocol())
- .def("__init__", [](Matrix &m, py::buffer b) {
+ .def(py::init([](py::buffer b) {
typedef Eigen::Stride<Eigen::Dynamic, Eigen::Dynamic> Strides;
/* Request a buffer descriptor from Python */
@@ -101,8 +101,8 @@ buffer objects (e.g. a NumPy matrix).
auto map = Eigen::Map<Matrix, 0, Strides>(
static_cast<Scalar *>(info.ptr), info.shape[0], info.shape[1], strides);
- new (&m) Matrix(map);
- });
+ return Matrix(map);
+ }));
For reference, the ``def_buffer()`` call for this Eigen data type should look
as follows:
@@ -274,9 +274,9 @@ simply using ``vectorize``).
py::buffer_info buf3 = result.request();
- double *ptr1 = (double *) buf1.ptr,
- *ptr2 = (double *) buf2.ptr,
- *ptr3 = (double *) buf3.ptr;
+ double *ptr1 = static_cast<double *>(buf1.ptr);
+ double *ptr2 = static_cast<double *>(buf2.ptr);
+ double *ptr3 = static_cast<double *>(buf3.ptr);
for (size_t idx = 0; idx < buf1.shape[0]; idx++)
ptr3[idx] = ptr1[idx] + ptr2[idx];
@@ -309,17 +309,17 @@ where ``N`` gives the required dimensionality of the array:
m.def("sum_3d", [](py::array_t<double> x) {
auto r = x.unchecked<3>(); // x must have ndim = 3; can be non-writeable
double sum = 0;
- for (ssize_t i = 0; i < r.shape(0); i++)
- for (ssize_t j = 0; j < r.shape(1); j++)
- for (ssize_t k = 0; k < r.shape(2); k++)
+ for (py::ssize_t i = 0; i < r.shape(0); i++)
+ for (py::ssize_t j = 0; j < r.shape(1); j++)
+ for (py::ssize_t k = 0; k < r.shape(2); k++)
sum += r(i, j, k);
return sum;
});
m.def("increment_3d", [](py::array_t<double> x) {
auto r = x.mutable_unchecked<3>(); // Will throw if ndim != 3 or flags.writeable is false
- for (ssize_t i = 0; i < r.shape(0); i++)
- for (ssize_t j = 0; j < r.shape(1); j++)
- for (ssize_t k = 0; k < r.shape(2); k++)
+ for (py::ssize_t i = 0; i < r.shape(0); i++)
+ for (py::ssize_t j = 0; j < r.shape(1); j++)
+ for (py::ssize_t k = 0; k < r.shape(2); k++)
r(i, j, k) += 1.0;
}, py::arg().noconvert());
@@ -371,6 +371,8 @@ Ellipsis
Python 3 provides a convenient ``...`` ellipsis notation that is often used to
slice multidimensional arrays. For instance, the following snippet extracts the
middle dimensions of a tensor with the first and last index set to zero.
+In Python 2, the syntactic sugar ``...`` is not available, but the singleton
+``Ellipsis`` (of type ``ellipsis``) can still be used directly.
.. code-block:: python
@@ -384,3 +386,51 @@ operation on the C++ side:
py::array a = /* A NumPy array */;
py::array b = a[py::make_tuple(0, py::ellipsis(), 0)];
+
+.. versionchanged:: 2.6
+ ``py::ellipsis()`` is now also avaliable in Python 2.
+
+Memory view
+===========
+
+For a case when we simply want to provide a direct accessor to C/C++ buffer
+without a concrete class object, we can return a ``memoryview`` object. Suppose
+we wish to expose a ``memoryview`` for 2x4 uint8_t array, we can do the
+following:
+
+.. code-block:: cpp
+
+ const uint8_t buffer[] = {
+ 0, 1, 2, 3,
+ 4, 5, 6, 7
+ };
+ m.def("get_memoryview2d", []() {
+ return py::memoryview::from_buffer(
+ buffer, // buffer pointer
+ { 2, 4 }, // shape (rows, cols)
+ { sizeof(uint8_t) * 4, sizeof(uint8_t) } // strides in bytes
+ );
+ })
+
+This approach is meant for providing a ``memoryview`` for a C/C++ buffer not
+managed by Python. The user is responsible for managing the lifetime of the
+buffer. Using a ``memoryview`` created in this way after deleting the buffer in
+C++ side results in undefined behavior.
+
+We can also use ``memoryview::from_memory`` for a simple 1D contiguous buffer:
+
+.. code-block:: cpp
+
+ m.def("get_memoryview1d", []() {
+ return py::memoryview::from_memory(
+ buffer, // buffer pointer
+ sizeof(uint8_t) * 8 // buffer size
+ );
+ })
+
+.. note::
+
+ ``memoryview::from_memory`` is not available in Python 2.
+
+.. versionchanged:: 2.6
+ ``memoryview::from_memory`` added.